plone

R-qtl-1.39.5-1.lbn19.x86_64
R-qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. Our goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. We have implemented the main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses. The current version of R-qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation and Haley-Knott regression.
Located in LBN / … / Big Data / BastionLinux 19
R-qvalue-1.38.0-3.lbn19.noarch
It takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining. This package is a part of the Bioconductor (bioconductor.org) project.
Located in LBN / … / Big Data / BastionLinux 19
R-repr-0.9-1.lbn19.noarch
String and binary representations of objects for several formats / mime types.
Located in LBN / … / Big Data / BastionLinux 19
R-rlecuyer-0.3.3-10.lbn19.x86_64
Provides an interface to the C implementation of the random number generator with multiple independent streams developed by L'Ecuyer et al (2002). The main purpose of this package is to enable the use of this random number generator in parallel R applications.
Located in LBN / … / Big Data / BastionLinux 19
R-rtracklayer-1.32.2-1.lbn19.x86_64
Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, and BigWig built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.
Located in LBN / … / Big Data / BastionLinux 19
R-sandwich-2.3.0-4.lbn19.noarch
Model-robust standard error estimators for cross-sectional, time series and longitudinal data.
Located in LBN / … / Big Data / BastionLinux 19
R-sciplot-1.1.0-8.lbn19.noarch
A collection of functions that creates graphs with error bars for data collected from one-way or higher factorial designs
Located in LBN / … / Big Data / BastionLinux 19
R-snow-0.4_1-1.lbn19.noarch
Support for simple parallel computing in R.
Located in LBN / … / Big Data / BastionLinux 19
R-statmod-1.4.20-4.lbn19.x86_64
Various statistical modeling functions including growth curve comparisons, limiting dilution analysis, mixed linear models, heteroscedastic regression, Tweedie family generalized linear models, the inverse-Gaussian distribution and Gauss quadrature.
Located in LBN / … / Big Data / BastionLinux 19
R-stringi-1.1.1-1.lbn19.x86_64
Allows for fast, correct, consistent, portable, as well as convenient character string/text processing in every locale and any native encoding. Owing to the use of the ICU library, the package provides R users with platform-independent functions known to Java, Perl, Python, PHP, and Ruby programmers. Among available features there are: pattern searching (e.g., with ICU Java-like regular expressions or the Unicode Collation Algorithm), random string generation, case mapping, string transliteration, concatenation, Unicode normalization, date-time formatting and parsing, etc.
Located in LBN / … / Big Data / BastionLinux 19

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