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R-BufferedMatrix-1.28.0-4.lbn19.x86_64
A tabular style data object where most data is stored outside main memory.
A buffer is used to speed up access to data.
This library is part of the bioconductor (bioconductor.org) project.
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R-BufferedMatrixMethods-1.28.0-4.lbn19.x86_64
Microarray analysis methods that use BufferedMatrix objects
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R-DBI-0.3.1-3.lbn19.noarch
A database interface (DBI) definition for communication between R and
relational database management systems.
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R-DynDoc-1.42.0-3.lbn19.noarch
A set of functions to create and interact with dynamic documents and
vignettes.
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R-GeneR-2.24.0-11.lbn19.x86_64
Package manipulating nucleotidic sequences (Embl, Fasta, GenBank).
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R-GenomeInfoDb-1.8.7-1.lbn19.noarch
The Seqnames package contains data and functions that define and allow
translation between different chromosome sequence naming conventions (e.g.,
"chr1" versus "1"), including a function that attempts to place sequence
names in their natural, rather than lexicographic, order.
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R-GenomicAlignments-1.8.4-1.lbn19.x86_64
Representation and manipulation of short genomic alignments
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R-GenomicFeatures-1.24.5-1.lbn19.noarch
A set of tools and methods for making and manipulating transcript centric
annotations. With these tools the user can easily download the genomic
locations of the transcripts, exons and cds of a given organism, from either
the UCSC Genome Browser or a BioMart database (more sources will be supported
in the future). This information is then stored in a local database that
keeps track of the relationship between transcripts, exons, cds and genes.
Flexible methods are provided for extracting the desired features in a
convenient format.
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R-GenomicRanges-1.24.2-1.lbn19.x86_64
The ability to efficiently store genomic annotations and alignments is
playing a central role when it comes to analyze high-throughput sequencing
data (a.k.a. NGS data). The package defines general purpose containers for
storing genomic intervals as well as more specialized containers for
storing alignments against a reference genome.
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R-IRanges-2.6.1-1.lbn19.x86_64
The IRanges class and its extensions are low-level containers
for storing sets of integer ranges. A typical use of these containers
in biology is for representing a set of chromosome regions.
More specific extensions of the IRanges class will typically
allow the storage of additional information attached to each
chromosome region as well as a hierarchical relationship between
these regions.
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