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R-Rcpp-1.0.9-1.fc36.x86_64
The Rcpp package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and
objects can be mapped back and forth to C++ equivalents which
facilitates both writing of new code as well as easier integration of
third-party libraries.
Documentation about Rcpp is provided by several vignettes included in
this package, via the Rcpp Gallery site at http://gallery.rcpp.org,
the paper by Eddelbuettel and Francois (2011, JSS), and the book by
Eddelbuettel (2013, Springer).
See citation("Rcpp") for details on the last two.
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R-Rcpp-1.0.9-1.fc36.x86_64
The Rcpp package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and
objects can be mapped back and forth to C++ equivalents which
facilitates both writing of new code as well as easier integration of
third-party libraries.
Documentation about Rcpp is provided by several vignettes included in
this package, via the Rcpp Gallery site at http://gallery.rcpp.org,
the paper by Eddelbuettel and Francois (2011, JSS), and the book by
Eddelbuettel (2013, Springer).
See citation("Rcpp") for details on the last two.
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R-RcppCCTZ-0.2.9-5.fc36.x86_64
'Rcpp' Access to the 'CCTZ' timezone library is provided. 'CCTZ' is a C++
library for translating between absolute and civil times using the rules of a
time zone.
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R-Rmpfr-0.8.4-4.fc36.x86_64
Arithmetic (via S4 classes and methods) for arbitrary precision floating
point numbers, including transcendental ("special") functions. To this
end, the package interfaces to the 'LGPL' licensed 'MPFR' (Multiple
Precision Floating-Point Reliable) Library which itself is based on the
'GMP' (GNU Multiple Precision) Library.
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R-Rsamtools-2.8.0-3.fc36.x86_64
This package provides an interface to the 'samtools', 'bcftools',
and 'tabix' utilities (see 'LICENCE') for manipulating SAM
(Sequence Alignment / Map), binary variant call (BCF) and
compressed indexed tab-delimited (tabix) files.
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R-Rsolid-0.9.31-38.fc36.x86_64
Rsolid is an R package for normalizing fluorescent intensity data from
ABI/SOLiD second generation sequencing platform. It has been observed
that the color-calls provided by factory software contain technical
artifacts, where the proportions of colors called are extremely
variable across sequencing cycles. Under the random DNA fragmentation
assumption, these proportions should be equal across sequencing cycles
and proportional to the dinucleotide frequencies of the sample.
Rsolid implements a version of the quantile normalization algorithm
that transforms the intensity values before calling colors. Results
show that after normalization, the total number of mappable reads
increases by around 5%, and number of perfectly mapped reads increases
by 10%. Moreover a 2-5% reduction in overall error rates is observed,
with a 2-6% reduction in the rate of valid adjacent color
mis-matches. The latter is important, since it leads to a decrease in
false-positive SNP calls.
The normalization algorithm is computationally efficient. In a test we
are able to process 300 million reads in 2 hours using 10 computer
cluster nodes. The engine functions of the package are written in C
for better performance.
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R-S4Vectors-0.30.0-3.fc36.x86_64
The S4Vectors package defines the Vector and List virtual classes and a set of
generic functions that extend the semantic of ordinary vectors and lists in R.
Package developers can easily implement vector-like or list-like objects as
concrete subclasses of Vector or List. In addition, a few low-level concrete
subclasses of general interest (e.g. DataFrame, Rle, and Hits) are implemented
in the S4Vectors package itself (many more are implemented in the IRanges
package and in other Bioconductor infrastructure packages).
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R-SummarizedExperiment-1.22.0-3.fc36.noarch
The SummarizedExperiment container contains one or more assays, each
represented by a marix-like object of numeric or other mode. The rows
typically represent genomic ranges of interest and the columns represent
samples.
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R-TH-data-1.0.10-8.fc35.noarch
Data for other R packages.
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R-V8-3.4.2-4.fc36.x86_64
An R interface to V8: Google's open source JavaScript and WebAssembly engine.
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