Modified items

All recently modified items, latest first.

R-IRkernel-0.6.1-1.git659435f.lbn19.noarch: Per default IRkernel::installspec() will install a kernel with the name “ir” and a display name of “R”. Multiple calls will overwrite the kernel with a kernel spec pointing to the last R interpreter you called that commands from. You can install kernels for multiple versions of R by supplying a name and displayname argument to the installspec() call

R-IRdisplay-0.4.4-1.lbn19.noarch: An interface to the rich display capabilities of 'Jupyter' front-ends (e.g. 'Jupyter Notebook') <https://jupyter.org>. Designed to be used from a running 'IRkernel' session

R-IRanges-2.6.1-1.lbn19.x86_64: The IRanges class and its extensions are low-level containers for storing sets of integer ranges. A typical use of these containers in biology is for representing a set of chromosome regions. More specific extensions of the IRanges class will typically allow the storage of additional information attached to each chromosome region as well as a hierarchical relationship between these regions.

R-GenomicRanges-1.24.2-1.lbn19.x86_64: The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

R-GenomicFeatures-1.24.5-1.lbn19.noarch: A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.

R-GenomicAlignments-1.8.4-1.lbn19.x86_64: Representation and manipulation of short genomic alignments

R-GenomeInfoDb-1.8.7-1.lbn19.noarch: The Seqnames package contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.

R-GeneR-2.24.0-11.lbn19.x86_64: Package manipulating nucleotidic sequences (Embl, Fasta, GenBank).

R-DynDoc-1.42.0-3.lbn19.noarch: A set of functions to create and interact with dynamic documents and vignettes.

R-DBI-0.3.1-3.lbn19.noarch: A database interface (DBI) definition for communication between R and relational database management systems.

R-BufferedMatrixMethods-1.28.0-4.lbn19.x86_64: Microarray analysis methods that use BufferedMatrix objects

R-BufferedMatrix-1.28.0-4.lbn19.x86_64: A tabular style data object where most data is stored outside main memory. A buffer is used to speed up access to data. This library is part of the bioconductor (bioconductor.org) project.

R-Biostrings-2.40.2-2.lbn19.x86_64: Memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or set of sequences.

R-BiocParallel-1.6.6-1.lbn19.noarch: Bioconductor facilities for parallel evaluation

R-BiocGenerics-0.18.0-1.lbn19.noarch: S4 generic functions needed by many other Bioconductor packages.

R-Biobase-2.32.0-1.lbn19.x86_64: Base functions for Bioconductor (bioconductor.org). Biobase provides functions that are needed by many other Bioconductor packages or which replace R functions.

R-BSgenome.Celegans.UCSC.ce2-1.4.0-5.lbn19.noarch: Caenorhabditis elegans genome grabbed from UCSC (ce2, Mar. 2004) and stored in Biostrings objects

R-BSgenome-1.40.1-1.lbn19.noarch: Infrastructure shared by all the Biostrings-based genome data packages

R-AnnotationDbi-1.34.4-1.lbn19.noarch: Provides user interface and database connection code for annotation data packages using SQLite data storage.

R-ALL-1.6.0-3.lbn19.noarch: Data of T- and B-cell Acute Lymphocytic Leukemia from the Ritz Laboratory at the DFCI (includes Apr 2004 versions)


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